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PHYC41070

Academic Year 2024/2025

Techniques in Biophysics (PHYC41070)

Subject:
Physics
College:
Science
School:
Physics
Level:
4 (Masters)
Credits:
5
Module Coordinator:
Dr Antonio Benedetto
Trimester:
Autumn
Mode of Delivery:
Blended
Internship Module:
No
How will I be graded?
Letter grades

Curricular information is subject to change.

This module is primarily designed for students interested in pursing their research activity in the interdisciplinary field of Biophysics. An introductory cell biology part is followed by a selection of scientific cases of study including biomembranes, membrane proteins, amyloids, and cells. Several physics techniques used in biophysics are discussed. The learning material comprises textbooks and scientific publications. The main assessment component consists of a (group) project.

About this Module

Learning Outcomes:

At the end of the module the student will have acquired basic knowledge of several biophysical approaches and of many of the most fascinating topics in the field.

Indicative Module Content:

After an introductory part devoted to cell biology fundamentals (e.g. lipids, proteins, DNA and RNA, cellular membranes), the module will focus on several cases of study, including: (i) protein amyloidogenesis in health, diseases and material sciences; (ii) structural and mechano-elastical properties of amyloid fibrils; (iii) structure, dynamics and viscoelastical properties of biomembranes, including cell membranes; (iv) the functioning of selected membrane protein channels including the Piezo 1 & 2 of the 2021 Nobel Prize in Physiology and Medicine; (v) cell migration, adhesion and invasion in heathy and pathological conditions, and the role of substrate elasticity. The main techniques that will be considered are: (a) neutron scattering, (b) atomic force microscopy, including fluidic force microscopy, (c) static and dynamic light scattering, (d) Infrared and Raman spectroscopies, (e) optical and electron microscopies, (f) optical tweezers, and (f) several cell biology approaches including cell survival assays, flow cytometry, western blotting, cell migration and adhesion assays, and patch-clamp. The module is lecture-based, but some lab-based activities might be offered depending on the number of students. The module will be enriched by seminars presented by international experts in the field. An overview of biophysical research carried out in UCD Physics and the other UCD Schools will also be presented.

Student Effort Hours:
Student Effort Type Hours
Lectures

0

Total

0


Approaches to Teaching and Learning:
Lectures; Seminars by international leading experts; Review of the scientific literature; Group project; Lab activities

Requirements, Exclusions and Recommendations

Not applicable to this module.


Module Requisites and Incompatibles
Not applicable to this module.
 

Assessment Strategy
Description Timing Component Scale Must Pass Component % of Final Grade In Module Component Repeat Offered
Group Work Assignment: A group of four students max will work on an agreed-upon project, which will be presented to the class in a 30-minute seminar followed by a Q&A session. A written 20-page report will also be submitted Week 6 Graded No
50
No
Group Work Assignment: A group of four students max will work on an agreed-upon project, which will be presented to the class in a 30-minute seminar followed by a Q&A session. A written 20-page report will also be submitted Week 12 Graded No
50
No

Carry forward of passed components
No
 

Resit In Terminal Exam
Spring No
Please see Student Jargon Buster for more information about remediation types and timing. 

Feedback Strategy/Strategies

• Feedback individually to students, on an activity or draft prior to summative assessment
• Group/class feedback, post-assessment
• Peer review activities

How will my Feedback be Delivered?

Feedback will be provided both individually to students and to the whole class.

1. Physical Biology of the Cell, R. Philips et al. Garland Science
2. Biological Physics, P. Nelson

Timetabling information is displayed only for guidance purposes, relates to the current Academic Year only and is subject to change.
Autumn Lecture Offering 1 Week(s) - Autumn: All Weeks Mon 15:00 - 17:50
Autumn Lecture Offering 1 Week(s) - Autumn: All Weeks Tues 13:00 - 13:50