Learning Outcomes:

At end of the module students should be able to:
Describe basic structure, properties and reactivity of amino acids and carbohydrates.
Apply the principles of conformational analysis of 'simple' organic molecules to understanding 'folding' in biological molecules. Describe the important reactions and reagents used in synthesis of biological molecules and describe the mechanism by which these reagents work and the usefulness of protecting group strategies. Describe selected chemical transformations of biomolecules. Apply selected physical techniques (NMR, MS) to obtaining information on the structure of biological molecules.
Apply and relate the principles of organic reaction mechanism to processes in biology and relate this to development of small molecules that can be useful as tools for studying biological systems or as drugs. Describe the basics of molecular recognition. Understand the principles of medicinal chemistry.
Perform a series of laboratory techniques and experiments required for synthesis, biotransformations, purification, isolation and (kinetic) analysis of biological molecules.
Carry out these laboratory procedures safely.

Indicative Module Content:

Basic structure, properties and reactivity of amino acids, nucleic acids and carbohydrates.
Principles of conformational analysis of 'simple' organic molecules and application to 'folding' of proteins.
Introduction to protecting group chemistry for carbohydrates and amino acids.
Basic reactions and reaction mechanisms for amino acids, nucleic acids and carbohydrates.
Selected chemical transformations of biomolecules (basics of DNA, RNA and protein synthesis).
Use of enzymes as catalysts for organic synthesis.
Use of physical techniques (NMR, MS) to obtaining information on the structure of biological molecules.
Application of principles of organic reaction mechanisms to processes in biology and the development of small molecules that can be useful as tools for studying biological systems or as drugs (e.g., AZT, anti-cancer drugs, anti-oxidants).
The basics of molecular recognition. The principles of medicinal chemistry.
Laboratory techniques: TLC, reduced pressure distillation, rotary evaporation, liquid-liquid separations with sep. funnels, natural product extraction, recording UV spectra and monitoring an enzymatic reaction by UV spectroscopy, protecting group reactions, dipeptide synthesis.

Student Effort Type	Hours
Lectures	24
Tutorial	4
Practical	24
Specified Learning Activities	8
Autonomous Student Learning	48
Total	108

Learning Requirements:

This module requires an understanding of basic organic chemistry. CHEM10050 is required.

Learning Recommendations:

CHEM20040

Pre-requisite:
CHEM10050 - Basis of Organic & Biol Chem


 

Assessment Strategy  

Description	Timing		Component Scale		% of Final Grade
Not yet recorded.

 

Resit In	Terminal Exam
Autumn	Yes - 2 Hour

• Feedback individually to students, post-assessment
• Group/class feedback, post-assessment

Feedback will be given on Lab reports by return of the report with annotations and laboratory demonstrators will give oral feedback to groups and/or individuals. Feedback will be given on homework assignments by tutors by return of the assignments with written annotations and tutors will give oral feedback to groups during tutorials.

Recommended Reading: Books with title “Organic Chemistry” will tend to have chapters dedicated to amino acids, proteins, carbohydrates and nucleic acids, e.g., McMurry (547.MCM)
An Introduction to Medicinal Chemistry, G.L. Patrick; Oxford University Press; 615.19 PAT. Use the index to find parts directly about the drugs described in the course. There is also material of broader interest.
Concepts of Genetics, W.S. Klug, M.R. Cummings; 576.5 KLU [Part two – The molecular basis of heredity, tackles many topics related to the course.]

Other Suggestions:
Foundations of Chemical Biology, C.M. Dobson, J.A. Gerrard, A.J. Pratt; Oxford Chemistry Primer; 572.DOB; This has some sections related to the course.
Free Radicals in Biology and Medicine, B Halliwell and J. M.C. Gutteridge, Oxford Science Publications, 3rd Ed. 572.33Hal: Chapter 3.22 Ascorbic acid, Vitamin E; Chapter 3.23 Carotenoids; Chapter 4.6/4.7/4.8 – Oxidative stress, damage to DNA. This book is slightly more advanced but there are a sub-sections related to the course if you are especially interested.

Name	Role
Assoc Professor Eoghan McGarrigle	Lecturer / Co-Lecturer
Professor Stefan Oscarson	Lecturer / Co-Lecturer
Miss Vanessa Becker	Tutor
Bodhayan Biswas	Tutor
Mr Ruairi Crawford	Tutor
Camilla Di Girolamo	Tutor
Mr Kacper Kluza	Tutor
Ms Aoife Martin	Tutor
Mr Fionn McNeill	Tutor
Ms Dairine Morgan	Tutor
Mr Paul Nolan	Tutor
Kathryn Yeow	Tutor