Learning Outcomes:
- Using the programme MaxQuant to identify and quantify proteins from mass spectrometric data
- Using the programme Perseus to correctly analyse protein expression profiles on a statistical basis
- Using the programme Perseus to correctly analyse protein phosphorylation patterns on a statistical basis
- Learning to recognise data quality limits that can render a statistical analysis impossible
- Learning how to use Data Independent Analysis techniques (DIA) to increase reproducibility in mass spectrometric experiments
- Learning how to use DIA-NN to analyse DIA data
- Differentiating between the requirements in the analysis of protein identification data, clinical and protein modification data